MCB111: Mathematics in Biology (Fall 2019)


week 10:

Molecular Population Dynamics as a Markov Process

Stochastic simulation of transcriptional bursting

We are going to simulate the gene regulation Markov process that we described in class. The process includes 6 reactions.

r reaction propensity
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I have also added hints about how to sample from a exponential distributions easily, and about implementing the Gillespie algorithm.